PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781796
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 270aa    MW: 30053.5 Da    PI: 5.8478
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781796genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05104126123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C ++F ++  L  H++ H
  676781796 104 FSCNYCQRTFYSSQALGGHQNAH 126
                89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.38E-799131No hitNo description
Gene3DG3DSA:3.30.160.607.6E-4102130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDASRDEPMP SDSSCIVPTS TTLPFPDSLK LSLEHYNVDA EARQEKDAYD QKPGEEGIRL  60
DLMLAEYDYS QPQLNQELNL IDCLDASVVT PSYNGSGSTE QKLFSCNYCQ RTFYSSQALG  120
GHQNAHKRER SLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRSLGIQAH SMSHKQSPYN  180
AFGGEYGQLN WSRLPLVQQP AIGRLASTEN RHQMMFAPSL TSTCENFGRF DAGTLPVDIP  240
TPELWRRGAE LLKTAADEEQ QKNLDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937450.0AB493745.1 Arabidopsis thaliana At5g10970 mRNA for hypothetical protein, partial cds, clone: RAAt5g10970.
GenBankAL3652340.0AL365234.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project).
GenBankAL3912220.0AL391222.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399595.11e-165hypothetical protein EUTSA_v10015251mg
SwissprotQ392625e-81ZFP3_ARATH; Zinc finger protein 3
TrEMBLV4LMJ71e-165V4LMJ7_EUTSA; Uncharacterized protein
STRINGAT5G10970.11e-155(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-159C2H2 family protein